Conference Program
 
COMPUTER AIDED DRUG DESIGN

July 31 - August 5, 2005
Tilton School
Tilton, NH

Chair:
Peter Jurs

Vice Chair:
Richard A. Lewis

Financial Contributors

Abbott Laboratories
Accelrys Software, Inc.
AstraZeneca R&D Boston
Aventis Pharmaceuticals Inc.
Boehringer Ingelheim Pharmaceuticals, Inc.
Bristol-Myers Squibb Company
Chemical Computing Group Inc.
Computers in Chemistry Division of A.C.S.
Genentech, Inc.
GlaxoSmith Kline
H. Lundbeck
Hoffman-LaRoche
Merck & Co., Inc.
Neurogen Corporation
Novartis Institute for Biomedical Research Inc.
OpenEye Scientific Software, Inc.
Pfizer, Inc.
Procter & Gamble Pharmaceuticals
Schrodinger, Inc.
Semichem, Inc.
Daniel Severance
Tripos Associates, Inc.


SUNDAY
2:00 pm - 9:00 pmArrival and Check-in
6:00 pmDinner
7:30 pm - 9:30 pmSCORING DOCKING POSES
Discussion Leader: Michal Vieth (Lilly)
7:30 pm - 8:30 pmChris Murray (Astex Technology)
"The Challenges Facing Virtual Screening and Docking"
8:30 pm - 9:30 pmArthur Doweyko (Bristol-Myers Squibb)
"Host/guest Complexation and the Hydrophobic Effect Using a Simple Solvent with Simple Properties"
MONDAY
7:30 am - 8:30 amBreakfast
8:30 amPhoto
9:00 am - 12:30 pmCHEMINFORMATICS I
Discussion Leader: Michael Lajiness (Lilly)
9:00 am - 10:00 amGavin Harper (GlaxoSmithKline)
"New Methods for Extracting Knowledge from HTS Data"
10:00 am Coffee Break
10:30 am - 11:30 amChristian Parker (Novartis)
"Data mining or Hypothesis Dredging?"
11:30 am - 12:30 pmMark Mackey (Cresset Biomolecular Discovery)
"Field Sampling as a 3D Molecular Similarity Metric"
12:30 pmLunch
1:30 pm - 4:00 pmFree Time
4:00 pm - 6:00 pmPoster Session
6:00 pmDinner
7:30 pm - 9:30 pmCHEMINFORMATICS II
Discussion Leader: Dan Ortwine (Pfizer)
7:30 pm - 8:30 pm Nicole Kratochwil (Roche)
"Plasma protein binding of drugs: 100 years of study - accurate prediction?"
8:30 pm - 9:30 pmOpen Mike Session
Mohammad Afshar (Ariana Pharma)
Multiparametric optimisation using novel rule based artificial inteligence technology
Julen Oyarzabal (Johnson & Johnson)
Navigating MedChem Space: Key for Multi-Factorial Optimization in Drug Discovery
Yaoqi Zhou (SUNY Buffalo)
Template-based Protein Structure Prediction by SPARKS 2 and SP3
David Harriman (University of New Brunswick)
Rational Design of Organocatalysts
William Rockey (University of Iowa)
Rapid computational identification of the targets of protein kinase inhibitors
Alan Graves (UCSF)
Pushing the boundaries of virtual high throughput screening with a database of small molecule decoys
Jufang Shan (St. Jude)
Identification of Non-peptide Inhibitor of the Dishevelled PDZ domain
Matthias Zentgraf (Philipps University Marburg)
Thermodynamic characterization of Aldose Reductase inhibitors by comparative MD simulations
Veerabahu Shanmugasundaram (Pfizer)
Stucture-based Design of Inhibitors Specific for BACE
TUESDAY
7:30 am - 8:30 amBreakfast
9:00 am - 12:30 pmENERGETICS OF MOLECULAR RECOGNITION
Discussion Leader: Jenny Krumrine (7TM Pharma)
9:00 am - 10:00 am Ernesto Freire (Johns Hopkins University)
"Thermodynamic Approaches in Drug Design: High Affinity, Selectivity, Adaptability"
10:00 am Coffee Break
10:30 am - 11:30 amTanja Kortemme (University of California San Francisco)
"Challenges in Prediction and Design of Protein-Protein Interaction Specificity"
11:30 am - 12:30 pmAdrian Elcock (University of Iowa)
"The Joys of Using Really Crude Energy Functions for Describing Protein-Protein and Ligand-Receptor Interactions"
12:30 pmLunch
1:30 pm - 4:00 pmFree Time
4:00 pm - 6:00 pmPoster Session
6:00 pmDinner
7:30 pm - 9:30 pmMODELLING GPCRS
Discussion Leader: Antonia do Amaral (University of Sao Paola)
7:30 pm - 8:30 pmKristin Meagher (University of Michigan)
"Recent Advances in Using Multiple Protein Structures for Drug Discovery"
8:30 pm - 9:30 pmOpen Mike Session
Holger Fischer (Hoffmann-La Roche)
Permeation of permanently charged molecules through biomembranes - influence of physico-chemical properties
Ismael Zamora (Pompeu Fabra University)
The integration of modeling tools in Scaffold Hopping
Michael Shirts (Columbia University)
Directly computing the free energy of binding of ligands to FKBP12
James Woolven (GlaxoSmith Kline)
Exploration of Methods to Simplify use of Free Energy Calculations for Prediction of Relative Binding Affinity amongst a Congeneric Series of Ligands to a Protein of known 3D Structure
Rebecca Perlow-Poehnelt (Merck)
Applications of multi-molecule superposition using ESEAL
Anna Linusson (Umea University)
Statistical experimental design of docking parameters for optimised ranking of docking poses towards the bioactive conformation
Gyorgy Keseru (Gedeon Richter)
An effective virtual screening protocol for beta-secretase (BACE1)
Katrin Silber (Philipps-University Marburg)
A Fragment-based Screening Approach to detect Metalloproteinase Inhibitors
Jeffrey Sutherland (Lilly)
Development of a knowledge-based scoring function using pharmacophores
Daniel Severance (Kalypsys)
Pharmacophore models based on minimal pharmacophores
WEDNESDAY
7:30 am - 8:30 amBreakfast
9:00 am - 12:30 pmPROTEIN MODELLING
Discussion Leader: Brian Shoichet (University of California San Francisco)
9:00 am - 10:00 am Holger Gohlke (J.W. Goethe University)
"Modeling Macromolecular Flexibility and Plasticity"
10:00 am Coffee Break
10:30 am - 11:30 amAndrej Sali (University of California San Francisco)
"Modeling the Structures of Proteins and Macromolecular Assemblies"
11:30 am - 12:30 pmNico P.E. Vermeulen (Vrije Universiteit)
"In silico prediction of drug binding and metabolism by Cytochromes P450 as a tool for compound selection"
12:30 pmLunch
1:30 pm - 4:00 pmFree Time
4:00 pm - 6:00 pmPoster Session
6:00 pmDinner
7:30 pm - 9:30 pmNEW TECHNOLOGIES
Discussion Leader: Bill Egan (Novartis)
7:30 pm - 8:30 pmVal Gillet (University of Sheffield)
"Generating Pharmacophore Hypotheses Using Multiobjective Optimisation Techniques"
8:30 pm - 9:30 pmRobert Clark (Tripos)
"Fishing in Molecular Haystacks"
THURSDAY
7:30 am - 8:30 amBreakfast
9:00 am - 12:30 pmDATA MINING
Discussion Leader: Thomas Fox (Boehringer Ingelheim)
9:00 am - 10:00 amJon Mason (Pfizer)
"Compound-Activity-Property-Target Relationships: A Cheminformatic-Chemogenomic Tour"
10:00 am Coffee Break
10:30 am - 11:30 amNicholas Froloff (Cerep)
"The BioPrint pharmaco-informatics platform: a large profile database for the development of relevant predictive models"
11:30 am - 12:30 pmAndrew Good (BMS)
"Illusions beyond the realms of QSAR: Analysis of Validation Protocols from Virtual Screening Enrichment to Drug-likeness Modeling"
12:30 pmLunch
1:30 pm - 6:00 pmFree Time
6:00 pmDinner
7:30 pm - 9:30 pmSTATE OF THE NATION
Discussion Leader: Tudor Oprea (University of New Mexico)
7:30 pm - 9:30 pmGarland Marshall (Washington University)
"Controlling Entropy - The Key to Protein Engineering"
FRIDAY
7:30 am - 8:30 amBreakfast
9:00 amDepart

Last Updated: May 4, 2006