Conference Program
 
BIOMOLECULAR INTERACTIONS & METHODS

January 15-20, 2006
Four Points Sheraton / Holiday Inn Express
Ventura, CA

Chairs:
Gary Ackers & Geoffrey J. Howlett

Vice Chairs:
Michelle Arkin & Colin Kleanthous

Many biological processes are carried out through the formation of macromolecular complexes, ranging from the simplest conformational organization to the most sophisticated interactions among complexes themselves. Reversible associations generate specific local conformations, active site configurations, and subunit - subunit interfaces, and encompass larger scale quaternary rearrangements and dissociation events. Assembled complexes exhibit properties different from those of component parts, such that "the whole is greater than the sum of the parts", resulting in biological functioning of the assembly.

This Gordon Research Conference brings together researchers from what may appear to be disparate fields with the common focus of applying quantitative kinetic and thermodynamic analysis to reversible macromolecular interactions. This conference will include the following session topics:

  • Protein design in evolution and recognition
  • Emerging technologies
  • Single molecule mechanics
  • Nucleic acid/protein recognition
  • Lipid/protein recognition
  • Protein switches and networks
  • Advances in classic technologies
  • Ligand/macromolecule complexes and drug design
  • Selected student oral presentations

all from the perspective of reversibly associating systems. A wide array of techniques are typically covered, from single molecule to computational methods, chromatography and analytical ultracentrifugation, spectroscopic dynamics and titration calorimetry. The quantitative analysis of assembled complexes demonstrates that these biologically important functions depend not just upon a single part of the molecule, but on the coordination brought about by the ensemble of interactions.

Applications from graduate students and young postdoctoral scientists are welcomed. A selection of short talks will be invited from students presenting posters.


CONTRIBUTORS
biogen icos wyatt
ABRF biacore sunesis
lilly carb abbott
  beckman coulter  

SUNDAY
4:00 pm - 9:00 pmArrival and Check-in
6:00 pmDinner
7:30 pm - 9:30 pmPROTEIN DESIGN IN EVOLUTION & RECOGNITION
Discussion Leader: Gideon Schreiber (Weizmann Institute)
7:30 pm - 8:00 pmGideon Schreiber (Weizmann Institute)
"The Molecular Architecture of Protein-Protein Interfaces as the Basis for Interface Design"
8:00 pm - 8:10 pmDiscussion
8:10 pm - 8:40 pmTanja Kortemme (UCSF)
"Prediction and Design of Specificity in Molecular Recognition"
8:40 pm - 8:50 pmDiscussion
8:50 pm - 9:20 pm Homme Helinga (Duke Univ)
"Computational Design of Binding Sites in Proteins"
9:20 pm - 9:30 pmDiscussion
9:30 pm Poster Session / Reception
MONDAY
7:30 am - 8:30 amBreakfast
8:30 amGroup Photo
9:00 am - 12:30 pmEMERGING TECHNOLOGIES
Discussion Leader: Carol Robinson (Cambridge)
9:00 am - 9:35 am Jürgen Plitzko (Max Planck)
"Cellular Cryo-Electron Tomography - A Voyage to the Inner Space of Cells"
9:35 am - 9:45 amDiscussion
9:45 am - 10:20 amJin Zhang (Johns Hopkins)
"Spatio-Temporal Dynamics of cAMP and Phosphoinositides in Living Cells"
10:20 am - 10:30 amDiscussion
10:30 am - 11:00 amCoffee Break
11:00 am - 11:35 amTony Mittermaier (McGill)
"Studying High Energy States of Proteins by NMR Spectroscopy"
11:35 am - 11:45 amDiscussion
11:45 am - 12:20 pm Carol Robinson (Cambridge)
"Mass Spectrometry of Non-covalent Complexes - More than the Sum of Their Masses"
12:20 pm - 12:30 pmDiscussion
12:30 pmLunch
1:30 pm - 4:00 pmFree Time
4:00 pm - 6:00 pmPoster Session / Refreshments
6:00 pmDinner
7:30 pm - 9:30 pmLIGAND/MACROMOLECULE COMPLEXES & DRUG DESIGN
Discussion Leader: Jim Wells (UCSF)
7:30 pm - 8:00 pmJeffrey Huth (Abbott)
"Guiding the Selection of Hits and Targets with Biomolecular NMR"
8:00 pm - 8:10 pmDiscussion
8:10 pm - 8:40 pm Jack Taunton (UCSF)
"Catalytic and Non-Catalytic Nucleophiles as Selectivity Filters for Kinase Inhibitor Design"
8:40 pm - 8:50 pmDiscussion
8:50 pm - 9:20 pmJim Wells (UCSF)
"Trapping Allosteric Transitions in Proteins with Tethered Ligands"
9:20 pm - 9:30 pmDiscussion
9:30 pmPoster Session / Refreshments
TUESDAY
7:30 am - 8:30 amBreakfast
9:00 am - 12:30 pmSINGLE MOLECULE MECHANICS
Discussion Leader: Ignacio Tinoco (UC Berkeley)
9:00 am - 9:35 amCarlos Bustamante (UC Berkeley)
"Protein Unfolding"
9:35 am - 9:45 amDiscussion
9:45 am - 10:20 amJulio Fernandez (Columbia)
"Force Clamp Studies of the Mechanical Stability of Single Proteins"
10:20 am - 10:30 amDiscussion
10:30 am - 11:00 amCoffee Break
11:00 am - 11:35 amKoen Visscher (Univ. of Arizona)
"Single Molecule Mechanics of Translation by Ribosomes"
11:35 am - 11:45 amDiscussion
11:45 am - 12:20 pmIgnacio Tinoco (UC Berkeley)
"Misfolding and Rescue of RNA"
12:20 pm - 12:30 pmDiscussion
12:30 pmLunch
1:30 pm - 4:00 pmFree Time
4:00 pm - 6:00 pmPoster Session / Refreshments
6:00 pmDinner
7:30 pm - 9:30 pmPROTEIN/LIPID RECOGNITION
Discussion Leader: Stephen White (UC Irvine)
7:30 pm - 8:00 pmKaren Fleming (Johns Hopkins)
"Thermodynamics of Membrane Protein Interactions"
8:00 pm - 8:10 pmDiscussion
8:10 pm - 8:40 pm Lukas Tamm (Univ. of Virginia)
"How Enveloped Viruses Recognize and Modify Lipid Bilayers of Target Membranes to Gain Entry Into Cells"
8:40 pm - 8:50 pmDiscussion
8:50 pm - 9:20 pmJim Bowie (UCLA)
"Membrane Protein Structure, Folding, and Applications"
9:20 pm - 9:30 pmDiscussion
9:30 pmPoster Session / Refreshments
WEDNESDAY
7:30 am - 8:30 amBreakfast
9:00 am - 12:30 pmPROTEIN SWITCHES & NETWORKS
Discussion Leader: Rob Russell (EMBL)
9:00 am - 9:35 amHeng Zhu (Johns Hopkins)
"A Global Approach to Analyze Signaling Pathways and Posttranslational Modifications in Yeast"
9:35 am - 9:45 amDiscussion
9:45 am - 10:20 amRuss Finley (Wayne State Univ)
"A Comprehensive Protein Interaction Map for a Human Pathogenic Bacterium"
10:20 am - 10:30 amDiscussion
10:30 am - 11:00 am Coffee Break
11:00 am - 11:35 amForest White (MIT)
"Quantitative Proteomic Analysis of Cellular Signaling Networks"
11:35 am - 11:45 amDiscussion
11:45 am - 12:20 pmRob Russell (EMBL)
"Systematic Discovery of New Recognition Peptides Mediating Protein Interaction Networks"
12:20 pm - 12:30 pmDiscussion
12:30 pmLunch
1:30 pm - 4:00 pmFree Time
4:00 pm - 6:00 pmPoster Session / Refreshments
6:00 pmDinner
7:30 pm - 9:30 pmADVANCES IN CLASSIC METHODS
Discussion Leader: Peter Schuck (NIH)
7:30 pm - 8:00 pmMattia Rocco (Genova)
"Advances in Bead Modeling: From Side Chain Dynamics to Macromolecular Complexes"
8:00 pm - 8:10 pmDiscussion
8:10 pm - 8:40 pmAlexandre Bonvin (Utrecht)
"Information-Driven Modeling of Biomolecular Complexes"
8:40 pm - 8:50 pmDiscussion
8:50 pm - 9:20 pmPeter Schuck (NIH)
"Sedimentation Velocity Methods for the Study of Multi-Protein Complexes in Solution"
9:20 pm - 9:30 pmDiscussion
9:30 pm Poster Session / Refreshments
THURSDAY
7:30 am - 8:30 amBreakfast
9:00 am - 12:30 pmFUNCTIONAL TRANSITIONS IN PROTEIN-NUCLEIC ACID ASSEMBLIES
Discussion Leader: Dorothy Beckett (Univ. of Maryland)
9:00 am - 9:35 amJonathan Widom (Northwestern)
"Nucleosome Dynamics and Function"
9:35 am - 9:45 amDiscussion
9:45 am - 10:20 am Dorothy Beckett (Univ. of Maryland)
"Dissection of a Transcriptional Switch"
10:20 am - 10:30 amDiscussion
10:30 am - 11:00 amCoffee Break
11:00 am - 11:35 amNiraj Tolia (Cold Spring Harbor Lab.)
"The Structure of the RNAi Slicer, Argonaute - Implications for Substrate Loading and Turnover"
11:35 am - 11:45 amDiscussion
11:45 am - 12:20 pm Andrew Feig (Indiana Univ.)
"Understanding Hfq - a Nexus for Bacterial RNA Metabolism"
12:20 pm - 12:30 pmDiscussion
12:30 pmLunch
1:30 pm - 4:00 pmFree Time
4:00 pm - 6:00 pmPoster Session / Refreshments
6:00 pmDinner
7:30 pm - 9:30 pmBUSINESS MEETING / CLOSING TALK
7:30 pm - 8:20 pmBusiness Meeting
(Nominations for the next Vice Chair; Fill out Conference Evaluation Forms; Discuss future Site & Scheduling preferences; Election of the next Vice Chair)
8:20 pm - 8:30 pmDiscussion Leader: Gary Ackers (Washington Univ. Sch. Medicine)
8:30 pm - 9:30 pmTom Laue (Univ. New Hampshire)
"Are Biological Fluids Inherently More Ordered than We Think?"
FRIDAY
7:30 am - 8:30 amBreakfast
9:00 amDepart

Last Updated: October 11, 2006